SNP Profiles of MO 20   View Data

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 Key

 1234567891011121314
_Input profile
ACACAAAAAGAGAACCAAGGAGAAAACC
1._RUQ_1566
CCACGGACAAAGAGACAAAGAGAGAGAC
2._MITC-000675
CCACGGACAAAGAGACAAAGAGAGAGAC
3._MO_20_Fld#_171_Plt#_1
CCACGGACAAAGAGACAAAGAGAGAGAC
4._RUQ_1566
______AG_______
5._RUQ_1566
_____-_GG__GG___
6._GC-01-121-6-18
CCACGGACTTCTAGGTAACTAGCTCTGT
7._GC-08-167-4-10
CCACGGACTTCTAGGTAACTAGCTCTGT
8._GC-08-167-4-10
CCACGGACTTCTAGGTAACTAGCTCTGT
9._GC-08-167-4-10
CCACGGACTTCTAGGTAACTAGCTCTGT
10._GC-01-121-6-18
CCACGGACTTCTAGGTAACTAGCTCTGT
11._GC-01-121-6-18
CCACGGACTTCTAGGTAACTAGCTCTGT
12._GC-01-121-6-18
CCACGGACTTCTAGGTAACTAGCTCTGT
13._GC-01-121-6-18
CCACGGACTTCTAGGTAACTAGCTCTGT
14._GC-01-121-6-18
CCACGGACTTCTAGGTAACTAGCTCTGT
15._GC-08-167-4-10
CCACGGACTTCTAGGTAACTAGCTCTGT
16._RUQ_1566
_____CT____AG___
17._MO_20
_____CTAG_AA_____
18._MO_20
_____CTAG_AA_____
19._MO_20
_____CTAG_AA_____
20._MO_20
_____CTAG_AA_____
21._MO_20
_____CTAG_AA_____
22._MO_20
_____CTAG_AA_____
23._MO_20
_____CTAG_AA_____
24._MO_20
_____CTAG_AA_____
25._MO_20
_____CTAG_AA_____
26._MO_20
_____CTAG_AA_____
27._MO_20
_____CTAG_AA_____
28._GC-01-121-6-18
CCAAAGCCTTCCGGGGAACCGGTTCCTT
29._MO_20
_____CCGG_AA_____
30._MO_20
_____CCGG_TT_____
 1516171819202122232425262728
_Input profile
GGAAGGAAAAGGAAAGCCAGCCAAACAG
1._RUQ_1566
AGACAGAGACAGAGAG_AAGGAAACAG
2._MITC-000675
AGACAGAGACAGAGAG_AAGGAAACAG
3._MO_20_Fld#_171_Plt#_1
AGACAGAGACAGAGAGACAAGGAAACAG
4._RUQ_1566
_GT______AC_CC___
5._RUQ_1566
_-_-___CC-TT----
6._GC-01-121-6-18
CTGTCTTTACAGCT_ACTTCCAAGTCT
7._GC-08-167-4-10
CTGTCTTTACAGCTCTACTTCCAAGTCT
8._GC-08-167-4-10
CTGTCTTTACAGCTCTACTTCCAAGTCT
9._GC-08-167-4-10
CTGTCTTTACAGCTCTACTTCCAAGTCT
10._GC-01-121-6-18
CTGTCTTTACAGCTCTACTTCCAAGTCT
11._GC-01-121-6-18
CTGTCTTTACAGCTCTACTTCCAAGTCT
12._GC-01-121-6-18
CTGTCTTTACAGCTCTACTTCCAAGTCT
13._GC-01-121-6-18
CTGTCTTTACAGCTCTACTTCCAAGTCT
14._GC-01-121-6-18
CTGTCTTTACAGCTCTACTTCCAAGTCT
15._GC-08-167-4-10
CTGTCTTTACAGCTCTACTTCCAAGTCT
16._RUQ_1566
_______CTCC_GG__CT
17._MO_20
_GTCT_AC_CT_ACTTCCAAGTCT
18._MO_20
_GTCT_AC_CT_ACTTCCAAGTCT
19._MO_20
_GTCT_AC_CT_ACTTCCAAGTCT
20._MO_20
_GTCT_AC_CT_ACTTCCAAGTCT
21._MO_20
_GTCT_AC_CT_ACTTCCAAGTCT
22._MO_20
_GTCT_AC_CT_ACTTCCAAGTCT
23._MO_20
_GTCT_AC_CT_ACTTCCAAGTCT
24._MO_20
_GTCT_AC_CT_ACTTCCAAGTCT
25._MO_20
_GTCT_AC_CT_ACTTCCAAGTCT
26._MO_20
_GTCT_AC_CT_ACTTCCAAGTCT
27._MO_20
_GTCT_AC_CT_ACTTCCAAGTCT
28._GC-01-121-6-18
TTTTTTTT_GGTTCCAACCCGGGTTTT
29._MO_20
_TTTT___TT_AACCCGGGTTTT
30._MO_20
_TTTT_CC_CC_CCTTCCGGGGTT
 2930313233343536373839404142
_Input profile
AGATAGAAGGAAGGAGGGCCATATGGGG
1._RUQ_1566
AGATGGACGGAGGGAGCGACTTATAGAG
2._MITC-000675
AGATGGACGGAGGGAGCGACTTATAGAG
3._MO_20_Fld#_171_Plt#_1
AGATGGACGGAGGGAGCGACTTATAGAG
4._RUQ_1566
_____AG______AG_
5._RUQ_1566
__--CC-_-____--
6._GC-01-121-6-18
CTATGGACCCAGGGCTCGGTAAATAGAG
7._GC-08-167-4-10
CTATGGACCCAGGGCTCGGTAAATAGAG
8._GC-08-167-4-10
CTATGGACCCAGGGCTCGGTAAATAGAG
9._GC-08-167-4-10
CTATGGACCCAGGGCTCGGTAAATAGAG
10._GC-01-121-6-18
CTATGGACCCAGGGCTCGGTAAATAGAG
11._GC-01-121-6-18
CTATGGACCCAGGGCTCGGTAAATAGAG
12._GC-01-121-6-18
CTATGGACCCAGGGCTCGGTAAATAGAG
13._GC-01-121-6-18
CTATGGACCCAGGGCTCGGTAAATAGAG
14._GC-01-121-6-18
CTATGGACCCAGGGCTCGGTAAATAGAG
15._GC-08-167-4-10
CTATGGACCCAGGGCTCGGTAAATAGAG
16._RUQ_1566
__GGACGGAG_______AG
17._MO_20
CT__ACCCAG_CTCG__AT__
18._MO_20
CT__ACCCAG_CTCG__AT__
19._MO_20
CT__ACCCAG_CTCG__AT__
20._MO_20
CT__ACCCAG_CTCG__AT__
21._MO_20
CT__ACCCAG_CTCG__AT__
22._MO_20
CT__ACCCAG_CTCG__AT__
23._MO_20
CT__ACCCAG_CTCG__AT__
24._MO_20
CT__ACCCAG_CTCG__AT__
25._MO_20
CT__ACCCAG_CTCG__AT__
26._MO_20
CT__ACCCAG_CTCG__AT__
27._MO_20
CT__ACCCAG_CTCG__AT__
28._GC-01-121-6-18
CCAAGGAACCGGGGCCGGGGAATTGGGG
29._MO_20
CC__AACCGG_CCGG__TT__
30._MO_20
CC__CCCCAA_CCCC__AA__
 4344454647484950515253545556
_Input profile
ATAGAGGGGGAACGAACCCCGGAAAACC
1._RUQ_1566
AAGGAAGGGGATCGAGACACAGACAGCG
2._MITC-000675
AAGGAAGGGGATCGAGACACAGACAGCG
3._MO_20_Fld#_171_Plt#_1
AAGGAAGGGGATCGAGACACAGACAGCG
4._RUQ_1566
_________AC___CG
5._RUQ_1566
-_____-__AC_GG_-
6._GC-01-121-6-18
AACCAAGGGGATCG_ACACAGGTAGCG
7._GC-08-167-4-10
AACCAAGGGGATCG_ACACAGGTAGCG
8._GC-08-167-4-10
AACCAAGGGGATCG_ACACAGGTAGCG
9._GC-08-167-4-10
AACCAAGGGGATCG_ACACAGGTAGCG
10._GC-01-121-6-18
AACCAAGGGGATCG_ACACAGGTAGCG
11._GC-01-121-6-18
AACCAAGGGGATCG_ACACAGGTAGCG
12._GC-01-121-6-18
AACCAAGGGGATCG_ACACAGGTAGCG
13._GC-01-121-6-18
AACCAAGGGGATCG_ACACAGGTAGCG
14._GC-01-121-6-18
AACCAAGGGGATCG_ACACAGGTAGCG
15._GC-08-167-4-10
AACCAAGGGGATCG_ACACAGGTAGCG
16._RUQ_1566
AACC____CC______CG
17._MO_20
AA___GG____AC_GT_CG
18._MO_20
AA___GG____AC_GT_CG
19._MO_20
AA___GG____AC_GT_CG
20._MO_20
AA___GG____AC_GT_CG
21._MO_20
AA___GG____AC_GT_CG
22._MO_20
AA___GG____AC_GT_CG
23._MO_20
AA___GG____AC_GT_CG
24._MO_20
AA___GG____AC_GT_CG
25._MO_20
AA___GG____AC_GT_CG
26._MO_20
AA___GG____AC_GT_CG
27._MO_20
AA___GG____AC_GT_CG
28._GC-01-121-6-18
AATTGGGGGGTTCC_CCAAGGGGGGCC
29._MO_20
AA___GG____AA_GG_CC
30._MO_20
TT___AG____AA_GG_GG
 5758596061626364656667686970
_Input profile
CCGGAGAAGGAACCGGAAACACAACCCC
1._RUQ_1566
CCGGAGAAAAAGCCAGAGAACCAACCCG
2._MITC-000675
CCGGAGAAAAAGCCAGAGAACCAACCCG
3._MO_20_Fld#_171_Plt#_1
CCGGAGAAAAAGCCAGAGAACCAACCCG
4._RUQ_1566
CC_CT___GGAG____CCCT
5._RUQ_1566
CC_--__---__-CC_
6._GC-01-121-6-18
CCCCCTTTAGAGGGAGCTTTGGTTCCCG
7._GC-08-167-4-10
CCCCCTTTAGAGGGAG_TTGGTTCCCG
8._GC-08-167-4-10
CCCCCTTTAGAGGGAG_TTGGTTCCCG
9._GC-08-167-4-10
CCCCCTTTAGAGGGAGCTTTGGTTCCCG
10._GC-01-121-6-18
CCCCCTTTAGAGGGAGCTTTGGTTCCCG
11._GC-01-121-6-18
CCCCCTTTAGAGGGAGCTTTGGTTCCCG
12._GC-01-121-6-18
CCCCCTTTAGAGGGAGCTTTGGTTCCCG
13._GC-01-121-6-18
CCCCCTTTAGAGGGAGCTTTGGTTCCCG
14._GC-01-121-6-18
CCCCCTTTAGAGGGAGCTTTGGTTCCCG
15._GC-08-167-4-10
CCCCCTTTAGAGGGAGCTTTGGTTCCCG
16._RUQ_1566
CC_CT______TT____
17._MO_20
CC__TT__GG_______
18._MO_20
CC__TT__GG_______
19._MO_20
CC__TT__GG_______
20._MO_20
CC__TT__GG_______
21._MO_20
CC__TT__GG_______
22._MO_20
CC__TT__GG_______
23._MO_20
CC__TT__GG_______
24._MO_20
CC__TT__GG_______
25._MO_20
CC__TT__GG_______
26._MO_20
CC__TT__GG_______
27._MO_20
CC__TT__GG_______
28._GC-01-121-6-18
ACCCCCCCAAAAGGAATTGGTTTTAAGG
29._MO_20
AC__CC__GG_______
30._MO_20
CC__CC__GT_______
 717273747576777879808182  
_Input profile
GGCCGGGGAGCCAAGGAGAAAAAGX_XX_X
1._RUQ_1566
AACGAGGGAGCCAGCGAGATAGAAX_XX_X
2._MITC-000675
AACGAGGGAGCCAGCGAGATAGAAX_XX_X
3._MO_20_Fld#_171_Plt#_1
AACGAGGGAGCCAGCGAGATAGAAX_XX_X
4._RUQ_1566
_CG__AG______AAX_XX_X
5._RUQ_1566
_--_-CC_____-X_XX_X
6._GC-01-121-6-18
AACGCTCCAGCCCTCGCTATCTAAX_XX_X
7._GC-08-167-4-10
AACGCTCCAGCCCTCGCTATCTAAX_XX_X
8._GC-08-167-4-10
AACGCTCCAGCCCTCGCTATCTAAX_XX_X
9._GC-08-167-4-10
AACGCTCCAGCCCTCGCTATCTAAX_XX_X
10._GC-01-121-6-18
AACGCTCCAGCCCTCGCTATCTAAX_XX_X
11._GC-01-121-6-18
AACGCTCCAGCCCTCGCTATCTAAX_XX_X
12._GC-01-121-6-18
AACGCTCCAGCCCTCGCTATCTAAX_XX_X
13._GC-01-121-6-18
AACGCTCCAGCCCTCGCTATCTAAX_XX_X
14._GC-01-121-6-18
AACGCTCCAGCCCTCGCTATCTAAX_XX_X
15._GC-08-167-4-10
AACGCTCCAGCCCTCGCTATCTAAX_XX_X
16._RUQ_1566
AACGCT_______CT_X_XX_X
17._MO_20
_CGCT___CTCG_ATCTAAX_XX_X
18._MO_20
_CGCT___CTCG_ATCTAAX_XX_X
19._MO_20
_CGCT___CTCG_ATCTAAX_XX_X
20._MO_20
_CGCT___CTCG_ATCTAAX_XX_X
21._MO_20
_CGCT___CTCG_ATCTAAX_XX_X
22._MO_20
_CGCT___CTCG_ATCTAAX_XX_X
23._MO_20
_CGCT___CTCG_ATCTAAX_XX_X
24._MO_20
_CGCT___CTCG_ATCTAAX_XX_X
25._MO_20
_CGCT___CTCG_ATCTAAX_XX_X
26._MO_20
_CGCT___CTCG_ATCTAAX_XX_X
27._MO_20
_CGCT___CTCG_ATCTAAX_XX_X
28._GC-01-121-6-18
_GGCCCCGGCCCCGGCCAACTGGX_XX_X
29._MO_20
_GGCC___CCGG_AACTGGX_XX_X
30._MO_20
_CCTT___TTGG_TTTTAAX_XX_X

Input profile: MO_20 MO_20_Fld#_74_Plt#_1

 
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USDA-TARS, United States of America
Location: Field: 74, Tree: 1
 Mars, 2018

1._MO_20 RUQ_1566

64.8 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._MO_20 MITC-000675

64.8 %
81 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

3._MO_20 MO_20_Fld#_171_Plt#_1

64.6 %
82 shared markers

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USDA-TARS, United States of America
Location: Field: 171, Tree: 1
 Mars, 2018

4._MO_20 RUQ_1566

52.9 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

5._MO_20 RUQ_1566

40 %
10 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._MO_20 GC-01-121-6-18

36.9 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

7._MO_20 GC-08-167-4-10

36.9 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._MO_20 GC-08-167-4-10

36.9 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._MO_20 GC-08-167-4-10

36.4 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

10._MO_20 GC-01-121-6-18

36.4 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._MO_20 GC-01-121-6-18

36.4 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

12._MO_20 GC-01-121-6-18

36.4 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

13._MO_20 GC-01-121-6-18

36.4 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._MO_20 GC-01-121-6-18

36.4 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

15._MO_20 GC-08-167-4-10

36.4 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._MO_20 RUQ_1566

36.4 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

17._MO_20

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 9
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

18._MO_20

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 11
 Dapeng Zhang, 2016

19._MO_20

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 1 > FP
 Dapeng Zhang, 2016

20._MO_20

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 10 > F
 Dapeng Zhang, 2016

21._MO_20

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 2 > FP
 Dapeng Zhang, 2016

22._MO_20

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 4 > FP
 Dapeng Zhang, 2016

23._MO_20

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 1
 Dapeng Zhang, 2016

24._MO_20

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 2
 Dapeng Zhang, 2016

25._MO_20

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 3
 Dapeng Zhang, 2016

26._MO_20

35.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 4
 Dapeng Zhang, 2016

27._MO_20

35.7 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B D238 T2
 Dapeng Zhang, 2016

28._MO_20 GC-01-121-6-18

29.7 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

29._MO_20

27.9 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 13
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

30._MO_20

22.9 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 809
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998